2024

Clarke E, Varela L, Jenkins RE, Lozano-Andrés E, Cywińska A, Przewozny M, et al. Proteome and phospholipidome interrelationship of synovial fluid-derived extracellular vesicles in equine osteoarthritis: An exploratory ‘multi-omics’ study to identify composite biomarkers. Biochem Biophys Rep. 2024 Jan 18;37:101635.  

Haaker MW, Goossens V, Hoogland NAN, van Doorne H, Wang Z, Jansen JWA, et al. Early activation of hepatic stellate cells induces rapid initiation of retinyl ester breakdown while maintaining lecithin:retinol acyltransferase (LRAT) activity. Biochim Biophys Acta Mol Cell Biol Lipids. 2024 Oct;1869(7):159540.  

Varela L, Mol S, Taanman-Kueter EW, Ryan SE, Taams LS, de Jong E, et al. Lipidome profiling of neutrophil-derived extracellular vesicles unveils their contribution to the ensemble of synovial fluid-derived extracellular vesicles during joint inflammation. Biochim Biophys Acta BBA – Mol Cell Biol Lipids. 2024 Oct 1;1869(7):159534.  

Xu Y, Wang X, Zaal EA, Berkers CR, Lorent JH, Heise T, et al. Specific labeling of newly synthesized lipopolysaccharide via metabolic incorporation of azido-galactose. Biochim Biophys Acta Mol Cell Biol Lipids. 2024 May;1869(4):159467.  

Díaz-Casado ME, González-García P, López-Herrador S, Hidalgo-Gutiérrez A, Jiménez-Sánchez L, Barriocanal-Casado E, et al. Oral β-RA induces metabolic rewiring leading to the rescue of diet-induced obesity. Biochim Biophys Acta Mol Basis Dis. 2024 Oct;1870(7):167283.  

Li HL, Go S, Chang JC, Verhoeven A, Elferink RO. Soluble adenylyl cyclase, the cell-autonomous member of the family. Biochim Biophys Acta Mol Basis Dis. 2024 Feb;1870(2):166936.  

Bizerra PFV, Gilglioni EH, Li HL, Go S, Oude Elferink RPJ, Verhoeven AJ, et al. Opposite regulation of glycogen metabolism by cAMP produced in the cytosol and at the plasma membrane. Biochim Biophys Acta Mol Cell Res. 2024 Jan;1871(1):119585.  

Leemans B, Gadella BM, Marchand JHEAM, Van Soom A, Stout TAE. Induction of in vivo-like ciliation in confluent monolayers of re-differentiated equine oviduct epithelial cells†. Biol Reprod. 2024 Sep 14;111(3):580–99.  

de Kivit S, Mensink M, Kostidis S, Derks RJE, Zaal EA, Heijink M, et al. Immune suppression by human thymus-derived effector Tregs relies on glucose/lactate-fueled fatty acid synthesis. Cell Rep. 2024 Sep 24;43(9):114681.  

von Hegedus JH, de Jong AJ, Hoekstra AT, Spronsen E, Zhu W, Cabukusta B, et al. Oleic acid enhances proliferation and calcium mobilization of CD3/CD28 activated CD4+ T cells through incorporation into membrane lipids. Eur J Immunol. 2024 Sep;54(9):e2350685.  

Kes MMG, Berkers CR, Drost J. Bridging the gap: advancing cancer cell culture to reveal key metabolic targets. Front Oncol. 2024;14:1480613.  

Wang Y, Muylaert C, Wyns A, Vlummens P, De Veirman K, Vanderkerken K, et al. S-adenosylmethionine biosynthesis is a targetable metabolic vulnerability in multiple myeloma. Haematologica. 2024 Jan 1;109(1):256–71.  

Zhang X, Greve PF, Minh TTN, Wubbolts R, Demir AY, Zaal EA, et al. Extracellular vesicles from seminal plasma interact with T cells in vitro and drive their differentiation into regulatory T-cells. J Extracell Vesicles. 2024 Jul;13(7):e12457.  

Zaal EA, Jansen JWA, Berkers CR. Stable Isotope Tracing Experiments Using LC-MS. Methods Mol Biol Clifton NJ. 2025;2855:103–16.  

Veth TS, Nouwen LV, Zwaagstra M, Lyoo H, Wierenga KA, Westendorp B, et al. Assessment of Kinome-Wide Activity Remodeling upon Picornavirus Infection. Mol Cell Proteomics MCP. 2024 May;23(5):100757.

Yang C, Pataskar A, Feng X, Montenegro Navarro J, Paniagua I, Jacobs JJL, et al. Arginine deprivation enriches lung cancer proteomes with cysteine by inducing arginine-to-cysteine substitutants. Mol Cell. 2024 May 16;84(10):1904-1916.e7.  

Verheijen FWM, Tran TNM, Chang JC, Broere F, Zaal EA, Berkers CR. Deciphering metabolic crosstalk in context: lessons from inflammatory diseases. Mol Oncol. 2024 Jul;18(7):1759–76.  

Jiang X, Baig AH, Palazzo G, Del Pizzo R, Bortecen T, Groessl S, et al. P53-dependent hypusination of eIF5A affects mitochondrial translation and senescence immune surveillance. Nat Commun. 2024 Aug 28;15(1):7458.  

Nouwen LV, Breeuwsma M, Zaal EA, van de Lest CHA, Buitendijk I, Zwaagstra M, et al. Modulation of nucleotide metabolism by picornaviruses. PLOS Pathog. 2024 Mar 8;20(3):e1012036.  

Asimaki K, Vazakidou P, van Tol HTA, van Duursen MBM, Gadella BM. Ketoconazole blocks progesterone production without affecting other parameters of cumulus-oocyte complex maturation. Reprod Toxicol Elmsford N. 2024 Sep;128:108637.  

Sendino Garví E, van Slobbe GJJ, Zaal EA, de Baaij JHF, Hoenderop JG, Masereeuw R, et al. KCNJ16-depleted kidney organoids recapitulate tubulopathy and lipid recovery upon statins treatment. Stem Cell Res Ther. 2024 Aug 26;15(1):268.  

Brombacher EC, Patente TA, van der Ham AJ, Moll TJA, Otto F, Verheijen FWM, et al. AMPK activation induces RALDH+ tolerogenic dendritic cells by rewiring glucose and lipid metabolism. J Cell Biol. 2024 Oct 7;223(10):e202401024.